NCBI Prokaryotic Genome Annotation Pipeline (PGAP) input metadata (submol) JSON/YAML configuration file Json Format

$schema - Schema

consortium - Consortium

comment - Free text comment about the genome assembly

tp_assembly - Reserved

bioproject - BioProject ID (PRJXX) for the project, if available

biosample - BioSample ID (SAMXXX) for the sequenced sample, if available

sra SRA assembly data

#	accession	Actions
{{$index+1}}.

authors Author(s) of the genome assembly

#	author.first_name	author.last_name	author.middle_initial	Actions
{{$index+1}}.

.contact_info - Submitter contact information

_

contact_info.state - State or region

contact_info.fax - Fax number

contact_info.city - City

contact_info.country - Country

contact_info.department - Department or division submitting the genome assembly

contact_info.email - Email address

contact_info.first_name - First name

contact_info.middle_initial - First letter of middle name

contact_info.last_name - Last name

contact_info.organization - Organization or consortium submitting the genome assembly

contact_info.phone - Phone number

contact_info.postal_code - Postal code

contact_info.street - Street address

.fasta

_

fasta.class - Class of input type

fasta.location - Location of input file

locus_tag_prefix - Locus tag prefix

.organism

_

organism.strain - Strain

organism.genus_species - Genus and species

topology - Topology of the sequences included in the fasta file

location - Location of the sequences included in the fasta file

publications Publication describing the genome assembly

#	publication.status	publication.pmid	publication.title	Actions
{{$index+1}}.	{{row.publication.status}}	{{row.publication.pmid}}	{{row.publication.title}}

ToolMatter

Your Apps in Action

Use this form to visualize NCBI Prokaryotic Genome Annotation Pipeline (PGAP) input metadata (submol) JSON/YAML configuration file.

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sra SRA assembly data

authors Author(s) of the genome assembly

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publications Publication describing the genome assembly

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_authors

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_publications

publication.authors Author(s)

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